FastqPuri: high-performance preprocessing of RNA-seq data | BMC Bioinformatics | Full Text
Bioconductor for Sequence Analysis
FastQ Format – NGS Analysis
Babraham Bioinformatics - FastQC A Quality Control tool for High Throughput Sequence Data
HowTo: fasterq dump · ncbi/sra-tools Wiki · GitHub
How to download public SRA Run data – EzBioCloud Help center
README
3. Quality control — Genomics Tutorial 2020.2.0 documentation
RNA Sequence Analysis - Bioinformatics Workbook
03 What is the FASTQ format? (Download files from NCBI's SRA) - YouTube
Running the Full ICGS Workflow from FASTQ Files # - AltAnalyze
Batch downloading FASTQ files using the SRA toolkit, fastq-dump, and Python
04.2 Check your sequenced reads for quality (How to install/use FastQC) PART 2 - YouTube
Remove Poor Reads in FASTQ/A with Sequence_Cleaner
Fastq Utilities Service | BV-BRC
DeAnnIso
Downloading SRA data with the SRA toolkit, FastQC and import into Geneious (Part 3) - YouTube
SeqNjoy: Complete RNA-Seq workflows in your Desktop
Official 10x Genomics Support
BRB-SeqTools
bcl2fastq User Guide
From SRA to FASTQ file - Easy Guides - Wiki - STHDA
How to setup the pipeline of the RNA-Seq FASTQ file processing (macOS version) | Subio
How to setup the environment for the pipeline of FASTQ to VCF (RNA-Seq) tool. (macOS version) | Subio
BRB-SeqTools
